Sunan an-Nasa'i, Volume 2, Book 17, Hadith 1524 (DarusSalam) ⓘ
It was narrated from 'Aishah that: When it rained the Messenger of Allah would say: "Allahummaj'alhu Sayyiban nafi`a. (O Allah, make it beneficial rain)."
أَخْبَرَنَا مُحَمَّدُ بْنُ مَنْصُورٍ، قَالَ حَدَّثَنَا سُفْيَانُ، عَنْ مِسْعَرٍ، عَنِ الْمِقْدَامِ بْنِ شُرَيْحٍ، عَنْ أَبِيهِ، عَنْ عَائِشَةَ، أَنَّ رَسُولَ اللَّهِ صلى الله عليه وسلم كَانَ إِذَا أُمْطِرَ قَالَ " اللَّهُمَّ اجْعَلْهُ صَيِّبًا نَافِعًا " .
also referenced under: Hadith 1523 (Reference) & Book 17, Hadith 20 (In-Book)